Vanessa da Silva Dutra de Carvalho

Vanessa da Silva Dutra de Carvalho

Laboratory Director & Lead Mycologist at Libre Foods

Barcelona, Cataluña, España
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I am a curious and enthusiastic biologist with a background in Microbiology and Molecular Genetics. My academic journey includes a Master's degree in Microbiology and ongoing doctoral research. I have actively contributed to various research projects, exploring antifungal compounds, fungal responses to treatments, and physiological, morphogenic, and pathogenic processes in fungal cells.
Having worked in diverse laboratories across different countries and collaborated with researchers worldwide, I have acquired a wide range of technical skills in microbiology, mycology, microscopy, molecular biology, data analysis, and statistics. Additionally, my experiences have honed my soft skills, including effective teamwork, result communication, adaptability in high-pressure environments, empathy, team management, creative problem-solving, and event organization.
Currently, I serve as a lead mycologist at a biotech company focused on harnessing fungi's potential for sustainable solutions, through fermentation to produce innovative products like meat substitutes.
With a passion for continuous learning and a strong foundation in microbiology, I am committed to applying my knowledge and expertise to address complex challenges.

Actividad

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Experiencia

  • Libre Foods

    Libre Foods

    1 año 11 meses

    • Gráfico Libre Foods

      Laboratory Director

      Libre Foods

      - actualidad 5 mes

      Barcelona, Catalonia, Spain

      1. Create projects aligned to company mission, considering the lab potential, to optimize fungal research and mycelium production.
      2. Manage research projects related to mycology.
      3. Design, plan and perform experiments.
      4. Troubleshoot problems, analyze and interpret experiment results.
      5. Assist other laboratory members in their projects.
      6. Provide training to laboratory staff in the use of equipment, techniques and procedures.
      7. Set up the laboratory, and assist in…

      1. Create projects aligned to company mission, considering the lab potential, to optimize fungal research and mycelium production.
      2. Manage research projects related to mycology.
      3. Design, plan and perform experiments.
      4. Troubleshoot problems, analyze and interpret experiment results.
      5. Assist other laboratory members in their projects.
      6. Provide training to laboratory staff in the use of equipment, techniques and procedures.
      7. Set up the laboratory, and assist in purchasing laboratory and office equipment
      8. To curate the inventory of the laboratory supplies and keep them in good supply.
      9. Set up, test, operate and maintain laboratory equipment, ensuring they are properly stored and functional.
      10. Coordinate, monitor and ensure the implementation and enforcement of laboratory safety rules and procedures.

    • Gráfico Libre Foods

      Lead Mycologist

      Libre Foods

      - actualidad 1 año 11 meses

      Barcelona, Catalunha, Espanha

  • Gráfico Spanish Council for Scientific Research

    PHD Student

    Spanish Council for Scientific Research

    - 4 años 3 meses

    Salamanca, Castela Leão, Espanha

    Study of the mechanism of action of the antifungal compound Theonelamide A in the synthesis of the cell wall of (i)Schizossaccharomyces pombe(/i)

  • Science Teacher

    Prefeitura Municipal de João Monlevade

    - 5 mes

    João Monlevade e Região, Brasil

  • Gráfico Spanish Council for Scientific Research

    Laboratory Technician

    Spanish Council for Scientific Research

    - 6 mes

    Salamanca e Região, Espanha

    I carried out techniques of microbiology, microscopy, molecular genetic and biochemical in the research line: Cell wall biosynthesis and function in morphogenesis, polarity and cell division.

  • Gráfico Universidade Federal de Minas Gerais

    MSc Student

    Universidade Federal de Minas Gerais

    - 1 año 7 meses

    Mycology Laboratory

    Influence of plant hormones on the morphophysiology and virulence of capsulated yeast (i)Cryptococcus gattii (/i)

  • Gráfico Universidade Federal de Sao Joao del-Rei

    Laboratory Technician

    Universidade Federal de Sao Joao del-Rei

    - 9 mes

    São João del Rei Area, Brazil

    I worked as a technician in the Limnology Laboratory.

Educación

Publicaciones

  • Nicotiana benthamiana as a model for studying Cryptococcus-plant interaction

    FEMS Microbiology Ecology

    Cryptococcus gattii, an environmental yeast isolated from plants, is one of the agents of cryptococcosis. Here we aimed to develop a plant model to study C. gattii-plant interaction since it is unclear how it affects the plant and the yeast. We tested three inoculation methods (scarification, infiltration, and abrasion) in three plant species: Arabidopsis thaliana, Nicotiana tabacum, and N. benthamiana. C. gattii was able to grow in all three models, with a peak of yeast cell burden after seven…

    Cryptococcus gattii, an environmental yeast isolated from plants, is one of the agents of cryptococcosis. Here we aimed to develop a plant model to study C. gattii-plant interaction since it is unclear how it affects the plant and the yeast. We tested three inoculation methods (scarification, infiltration, and abrasion) in three plant species: Arabidopsis thaliana, Nicotiana tabacum, and N. benthamiana. C. gattii was able to grow in all three models, with a peak of yeast cell burden after seven days, without any pathological effects. Furthermore, the fungal burden was reduced later, confirming that C. gattii is not a phytopathogen. C. gattii proliferation was higher in N. benthamiana, which presented an increase in the hydrogen peroxide content, antioxidant system activity, and indoleacetic acid (IAA) production. C. gattii colonies recovered from N. benthamiana presented lower ergosterol content, reduced capsule, and increased growth rate in vitro and inside macrophages. In vitro, IAA altered C. gattii morphology and susceptibility to antifungal drugs. We hypothesize that C. gattii can temporarily colonize plant living tissues, which can be a potential reservoir of yeast virulence, with further dissemination to the environment, birds, and mammals. In conclusion, N. benthamiana is suitable for studying C. gattii-plant interaction.

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  • Echinocandin drugs induce differential effects in cytokinesis progression and cell integrity

    Pharmaceuticals

    Fission yeast contains three essential β(1,3)-D-glucan synthases (GSs), Bgs1, Bgs3, and Bgs4, with non-overlapping roles in cell integrity and morphogenesis. Only the bgs4+ mutants pbr1-8 and pbr1-6 exhibit resistance to GS inhibitors, even in the presence of the wild-type (WT) sequences of bgs1+ and bgs3+. Thus, Bgs1 and Bgs3 functions seem to be unaffected by those GS inhibitors. To learn more about echinocandins’ mechanism of action and resistance, cytokinesis progression and cell death were…

    Fission yeast contains three essential β(1,3)-D-glucan synthases (GSs), Bgs1, Bgs3, and Bgs4, with non-overlapping roles in cell integrity and morphogenesis. Only the bgs4+ mutants pbr1-8 and pbr1-6 exhibit resistance to GS inhibitors, even in the presence of the wild-type (WT) sequences of bgs1+ and bgs3+. Thus, Bgs1 and Bgs3 functions seem to be unaffected by those GS inhibitors. To learn more about echinocandins’ mechanism of action and resistance, cytokinesis progression and cell death were examined by time-lapse fluorescence microscopy in WT and pbr1-8 cells at the start of treatment with sublethal and lethal concentrations of anidulafungin, caspofungin, and micafungin. In WT, sublethal concentrations of the three drugs caused abundant cell death that was either suppressed (anidulafungin and micafungin) or greatly reduced (caspofungin) in pbr1-8 cells. Interestingly, the lethal concentrations induced differential phenotypes depending on the echinocandin used. Anidulafungin and caspofungin were mostly fungistatic, heavily impairing cytokinesis progression in both WT and pbr1-8. As with sublethal concentrations, lethal concentrations of micafungin were primarily fungicidal in WT cells, causing cell lysis without impairing cytokinesis. The lytic phenotype was suppressed again in pbr1-8 cells. Our results suggest that micafungin always exerts its fungicidal effect by solely inhibiting Bgs4. In contrast, lethal concentrations of anidulafungin and caspofungin cause an early cytokinesis arrest, probably by the combined inhibition of several GSs.

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  • Analysis and application of a suite of recombinant endo-β(1,3)-D-glucanases for studying fungal cell walls

    Microbial Cell Factories

    The fungal cell wall is an essential and robust external structure that protects the cell from the environment. It is mainly composed of polysaccharides with different functions, some of which are necessary for cell integrity. Thus, the process of fractionation and analysis of cell wall polysaccharides is useful for studying the function and relevance of each polysaccharide, as well as for developing a variety of practical and commercial applications. This method can be used to study the…

    The fungal cell wall is an essential and robust external structure that protects the cell from the environment. It is mainly composed of polysaccharides with different functions, some of which are necessary for cell integrity. Thus, the process of fractionation and analysis of cell wall polysaccharides is useful for studying the function and relevance of each polysaccharide, as well as for developing a variety of practical and commercial applications. This method can be used to study the mechanisms that regulate cell morphogenesis and integrity, giving rise to information that could be applied in the design of new antifungal drugs.
    Here we examined the efficiency and reproducibility of 12 recombinant endo-β(1,3)-D-glucanases for specifically degrading the cell wall β(1,3)-D-glucan by using a fast and reliable protocol of fractionation and analysis of the fission yeast cell wall. We found that the GH16 endo-β(1,3)-D-glucanase PfLam16A from Pyrococcus furiosus was able to completely and reproducibly degrade β(1,3)-D-glucan without causing the release of other polymers. The discovery of a reliable and efficient recombinant endo-β(1,3)-D-glucanase, capable of replacing the previously mentioned enzyme, will be useful for carrying out studies requiring the digestion of the fungal cell wall β(1,3)-D-glucan. This new commercial endo-β(1,3)-D-glucanase will allow the study of the cell wall composition under different conditions, along the cell cycle, in response to environmental changes or in cell wall mutants. Furthermore, this enzyme will also be greatly valuable for other practical and commercial applications such as genome research, chromosomes extraction, cell transformation, protoplast formation, cell fusion, cell disruption, industrial processes and studies of new antifungals that specifically target cell wall synthesis.

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  • N-acetylcysteine reduces amphotericin B deoxycholate nephrotoxicity and improves the outcome of murine cryptococcosis

    Medical Mycology

    Cryptococcosis is a life-threatening fungal infection, and its current treatment is toxic and subject to resistance. Drug repurposing represents an interesting approach to find drugs to reduce the toxicity of antifungals. In this study, we evaluated the combination of N-acetylcysteine (NAC) with amphotericin B (AMB) for the treatment of cryptococcosis. We examined the effects of NAC on fungal morphophysiology and on the macrophage fungicidal activity 3 and 24 hours post inoculation. The…

    Cryptococcosis is a life-threatening fungal infection, and its current treatment is toxic and subject to resistance. Drug repurposing represents an interesting approach to find drugs to reduce the toxicity of antifungals. In this study, we evaluated the combination of N-acetylcysteine (NAC) with amphotericin B (AMB) for the treatment of cryptococcosis. We examined the effects of NAC on fungal morphophysiology and on the macrophage fungicidal activity 3 and 24 hours post inoculation. The therapeutic effects of NAC combination with AMB were investigated in a murine model with daily treatments regimens. NAC alone reduced the oxidative burst generated by AMB in yeast cells, but did not inhibit fungal growth. The combination NAC + AMB decreased capsule size, zeta potential, superoxide dismutase activity and lipid peroxidation. In macrophage assays, NAC + AMB did not influence the phagocytosis, but induced fungal killing with different levels of oxidative bursts when compared to AMB alone: there was an increased reactive oxygen species (ROS) after 3 hours and reduced levels after 24 hours. By contrast, ROS remained elevated when AMB was tested alone, demonstrating that NAC reduced AMB oxidative effects without influencing its antifungal activity. Uninfected mice treated with NAC + AMB had lower concentrations of serum creatinine and glutamate-pyruvate transaminase in comparison to AMB. The combination of NAC + AMB was far better than AMB alone in increasing survival and reducing morbidity in murine-induced cryptococcosis, leading to reduced fungal burden in lungs and brain and also lower concentrations of pro-inflammatory cytokines in the lungs. In conclusion, NAC + AMB may represent an alternative adjuvant for the treatment of cryptococcosis.

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  • The fungal cell wall as a target for the development of new antifungal therapies

    Biotechnology Advances

    In the past three decades invasive mycoses have globally emerged as a persistent source of healthcare-associated infections. The cell wall surrounding the fungal cell opposes the turgor pressure that otherwise could produce cell lysis. Thus, the cell wall is essential for maintaining fungal cell shape and integrity. Given that this structure is absent in host mammalian cells, it stands as an important target when developing selective compounds for the treatment of fungal infections…

    In the past three decades invasive mycoses have globally emerged as a persistent source of healthcare-associated infections. The cell wall surrounding the fungal cell opposes the turgor pressure that otherwise could produce cell lysis. Thus, the cell wall is essential for maintaining fungal cell shape and integrity. Given that this structure is absent in host mammalian cells, it stands as an important target when developing selective compounds for the treatment of fungal infections. Consequently, treatment with echinocandins, a family of antifungal agents that specifically inhibits the biosynthesis of cell wall (1-3)β-D-glucan, has been established as an alternative and effective antifungal therapy. However, the existence of many pathogenic fungi resistant to single or multiple antifungal families, together with the limited arsenal of available antifungal compounds, critically affects the effectiveness of treatments against these life-threatening infections. Thus, new antifungal therapies are required. Here we review the fungal cell wall and its relevance in biotechnology as a target for the development of new antifungal compounds, disclosing the most promising cell wall inhibitors that are currently in experimental or clinical development for the treatment of some invasive mycoses.

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  • Approaches to the mechanism of antifungal activity of Zuccagnia punctata-Larrea nitida bi-herbal combination

    Phytomedicine

    In our previous study the synergism of four combinations of Zuccagnia punctata (ZpE) and Larrea nitida (LnE) exudates with the reliable statistical-based MixLow method was assessed, and the markers of the most anti-C. albicans synergistic ZpE-LnE bi-herbal combination were quantified according to European Medicines Agency (EMA).
    Here we have studied the mechanisms of action as well as the cytotoxic properties of the ZpE-LnE most synergistic combination found in the previous work.
    The…

    In our previous study the synergism of four combinations of Zuccagnia punctata (ZpE) and Larrea nitida (LnE) exudates with the reliable statistical-based MixLow method was assessed, and the markers of the most anti-C. albicans synergistic ZpE-LnE bi-herbal combination were quantified according to European Medicines Agency (EMA).
    Here we have studied the mechanisms of action as well as the cytotoxic properties of the ZpE-LnE most synergistic combination found in the previous work.
    The fungicidal properties of ZpE-LnE against C. albicans, its dual mechanism of action targeting the fungal membrane's ergosterol as well as the cell wall, its capacity of inhibiting several important virulence factors added to its low toxicity, make ZpE-LnE a good candidate for the development of a new antifungal bi-Herbal Medicinal Product.

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  • CIENCIA, y yo quiero ser... Micóloga!

    CIENCIA, y yo quiero ser científico!!!

    Un libro de divulgación científica en el que más de un centenar de investigadores cuentan cada uno de manera apasionante sobre su tema de investigación. El capítulo 37, "y yo quiero ser micóloga" empieza con
    "Todos los días somos perjudicados o nos beneficiamos, directa o indirectamente, por hongos. ¡Los micólogos son las personas que estudian estos seres increíbles! Gracias a sus características, los hongos son indispensables para el planeta y están más presentes en tu día a día de lo que…

    Un libro de divulgación científica en el que más de un centenar de investigadores cuentan cada uno de manera apasionante sobre su tema de investigación. El capítulo 37, "y yo quiero ser micóloga" empieza con
    "Todos los días somos perjudicados o nos beneficiamos, directa o indirectamente, por hongos. ¡Los micólogos son las personas que estudian estos seres increíbles! Gracias a sus características, los hongos son indispensables para el planeta y están más presentes en tu día a día de lo que imaginas. Conocer estas propiedades es esencial para que entiendas la importancia de los hongos y por qué el trabajo de un micólogo es tan apasionante."

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  • Environmental triazole induces cross-resistance to clinical drugs and affects morphophysiology and virulence of Cryptococcus gattii and C. neoformans

    Antimicrobial Agents and Chemotherapy

    Cryptococcus gattii and Cryptococcus neoformans are environmental fungi that cause cryptococcosis, which is usually treated with amphotericin B and fluconazole. However, therapeutic failure is increasing because of the emergence of resistant strains. Because these species are constantly isolated from vegetal materials and the usage of agrochemicals is growing, we postulate that pesticides could be responsible for the altered susceptibility of these fungi to clinical drugs. Therefore, we…

    Cryptococcus gattii and Cryptococcus neoformans are environmental fungi that cause cryptococcosis, which is usually treated with amphotericin B and fluconazole. However, therapeutic failure is increasing because of the emergence of resistant strains. Because these species are constantly isolated from vegetal materials and the usage of agrochemicals is growing, we postulate that pesticides could be responsible for the altered susceptibility of these fungi to clinical drugs. Therefore, we evaluated the influence of the pesticide tebuconazole on the susceptibility to clinical drugs, morphophysiology, and virulence of C. gattii and C. neoformans strains. The results showed that tebuconazole exposure caused in vitro cross-resistance (CR) between the agrochemical and clinical azoles (fluconazole, itraconazole, and ravuconazole) but not with amphotericin B. In some strains, CR was observed even after the exposure ceased. Further, tebuconazole exposure changed the morphology, including formation of pseudohyphae in C. neoformans H99, and the surface charge of the cells. Although the virulence of both species previously exposed to tebuconazole was decreased in mice, the tebuconazole-exposed colonies recovered from the lungs were more resistant to azole drugs than the nonexposed cells. This in vivo CR was confirmed when fluconazole was not able to reduce the fungal burden in the lungs of mice. The tolerance to azoles could be due to increased expression of the ERG11 gene in both species and of efflux pump genes (AFR1 and MDR1) in C. neoformans. Our study data support the idea that agrochemical usage can significantly affect human pathogens present in the environment by affecting their resistance to clinical drugs.

    Otros autores
    • Rafael Wesley Bastos
    • Hellem Cristina Silva Carneiro
    • Lorena Vívien Neves Oliveira
    • Marliete Carvalho Costa
    • Thaís Furtado Ferreira Magalhães
    • Cláudia Emanuela Rocha
    • Gabriella Freitas Ferreira
    • Frédérique Moyrand
    • Guilhem Janbon
    • Daniel Assis Santos
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  • In vitro photodynamic therapy against Foncecaea pedrosoi and Cladophialophora carrionii

    Mycoses

    Photodynamic therapy (PDT) has been originally developed for cancer treatment, but recently, it has been successfully employed against microorganisms, including fungi. Chromoblastomycosis is a subcutaneous fungal infection that is recalcitrant to conventional antifungal drug therapy. The most frequent species involved are Foncecaea pedrosoi and Cladophialophora carrionii. The present study aimed to verify the efficacy in vitro of PDT employing methylene blue (MB) as a photosensitiser and Light…

    Photodynamic therapy (PDT) has been originally developed for cancer treatment, but recently, it has been successfully employed against microorganisms, including fungi. Chromoblastomycosis is a subcutaneous fungal infection that is recalcitrant to conventional antifungal drug therapy. The most frequent species involved are Foncecaea pedrosoi and Cladophialophora carrionii. The present study aimed to verify the efficacy in vitro of PDT employing methylene blue (MB) as a photosensitiser and Light emmiting diode (LED) (InGaAl) as the light source. Methylene blue at the concentrations of 16, 32 and 64 μg/mL and LED (InGalP) were employed for 15 min against spores of two isolates of F. pedrosoi and two isolates of C. carrionii. The spores were plated on Sabouraud Dextrose agar and the number of colony forming units was counted after 7–10 days of incubation at 37 °C. The PDT with MB and LED was efficient in reducing the growth of all samples tested. Better results were obtained for the concentration of 32 μg/mL of MB. The treatment proved to be highly effective in killing the samples of F. pedrosoi and Cladophialophora pedrosoi tested in vitro. PDT arises as a promising alternative for the treatment of this subcutaneous infection.

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Idiomas

  • Portuguese

    Competencia bilingüe o nativa

  • English

    Competencia profesional completa

  • Spanish

    Competencia bilingüe o nativa

  • French

    Competencia básica

Empresas

  • Brazilian Society of Mycology

    Member

    - actualidad

    The Brazilian Society of Mycology (SBMic) is a non-profit entity created to integrate researchers, students and professionals in Mycology, promote the dissemination of this science throughout the national territory, standardize and normalize issues that refer to the practice and use of this science in the country. Founded in 1990, SBMy stands out for promoting the Brazilian Congress of Mycology, a triennial event that brings together approximately 1,000 participants from Brazil and other parts…

    The Brazilian Society of Mycology (SBMic) is a non-profit entity created to integrate researchers, students and professionals in Mycology, promote the dissemination of this science throughout the national territory, standardize and normalize issues that refer to the practice and use of this science in the country. Founded in 1990, SBMy stands out for promoting the Brazilian Congress of Mycology, a triennial event that brings together approximately 1,000 participants from Brazil and other parts of the world. https://sbmic.org/

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