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1. GEMSTAT GEMSTAT Public

   Thermodynamics-based models of transcriptional regulation by enhancers: the roles of synergistic activation, cooperative binding and short-range repression

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2. STAP STAP Public

   A biophysical model for analysis of transcription factor interaction and binding site arrangement from genome-wide binding data. http://www.ncbi.nlm.nih.gov/pubmed/19956545

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3. GEMSTAT_refinement_sampler GEMSTAT_refinement_sampler Public

   A tool to allow meaningful comparison of different refinement methods for GEMSTAT models.

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4. Enhancer-Activity-Predictor Enhancer-Activity-Predictor Public

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5. VarSAn VarSAn Public

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6. lncRNARN lncRNARN Public

   Script, code and data for analyses in the paper "Quantitative estimates of the regulatory influence of long non-coding RNAs on global gene expression variation using TCGA breast cancer transcriptom…

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