User profiles for "author:Prywes N"

Noam Prywes

University of California Berkeley
Verified email at berkeley.edu
Cited by 1319

Rubisco function, evolution, and engineering

N Prywes, NR Phillips, OT Tuck… - Annual review of …, 2023 - annualreviews.org
Carbon fixation is the process by which CO2 is converted from a gas into biomass. The
Calvin–Benson–Bassham cycle (CBB) is the dominant carbon-consuming pathway on …

Nonenzymatic copying of RNA templates containing all four letters is catalyzed by activated oligonucleotides

N Prywes, JC Blain, F Del Frate, JW Szostak - Elife, 2016 - elifesciences.org
The nonenzymatic replication of RNA is a potential transitional stage between the prebiotic
chemistry of nucleotide synthesis and the canonical RNA world in which RNA enzymes …

Accelerated RNA detection using tandem CRISPR nucleases

TY Liu, GJ Knott, DCJ Smock, JJ Desmarais… - Nature chemical …, 2021 - nature.com
Direct, amplification-free detection of RNA has the potential to transform molecular
diagnostics by enabling simple on-site analysis of human or environmental samples …

Revisiting trade-offs between Rubisco kinetic parameters

AI Flamholz, N Prywes, U Moran, D Davidi… - Biochemistry, 2019 - ACS Publications
Rubisco is the primary carboxylase of the Calvin cycle, the most abundant enzyme in the
biosphere, and one of the best-characterized enzymes. On the basis of correlations between …

Enhanced nonenzymatic RNA copying with 2-aminoimidazole activated nucleotides

L Li, N Prywes, CP Tam, DK O'flaherty… - Journal of the …, 2017 - ACS Publications
Achieving efficient nonenzymatic replication of RNA is an important step toward the
synthesis of self-replicating protocells that may mimic early forms of life. Despite recent …

Copying of mixed-sequence RNA templates inside model protocells

DK O'Flaherty, NP Kamat, FN Mirza, L Li… - Journal of the …, 2018 - ACS Publications
The chemical replication of RNA inside fatty acid vesicles is a plausible step in the
emergence of cellular life. On the primitive Earth, simple protocells with the ability to import …

Highly active rubiscos discovered by systematic interrogation of natural sequence diversity

D Davidi, M Shamshoum, Z Guo, YM Bar‐On… - The EMBO …, 2020 - embopress.org
CO 2 is converted into biomass almost solely by the enzyme rubisco. The poor carboxylation
properties of plant rubiscos have led to efforts that made it the most kinetically characterized …

Chain-length heterogeneity allows for the assembly of fatty acid vesicles in dilute solutions

I Budin, N Prywes, N Zhang, JW Szostak - Biophysical journal, 2014 - cell.com
A requirement for concentrated and chemically homogeneous pools of molecular building
blocks would severely restrict plausible scenarios for the origin of life. In the case of …

Rapid detection of SARS-CoV-2 RNA in saliva via Cas13

SS Chandrasekaran, S Agrawal, A Fanton… - Nature biomedical …, 2022 - nature.com
Rapid nucleic acid testing is central to infectious disease surveillance. Here, we report an
assay for rapid COVID-19 testing and its implementation in a prototype microfluidic device …

Protein design using structure-based residue preferences

D Ding, AY Shaw, S Sinai, N Rollins, N Prywes… - Nature …, 2024 - nature.com
Recent developments in protein design rely on large neural networks with up to 100s of
millions of parameters, yet it is unclear which residue dependencies are critical for …