Russell Burke’s Post

Join our 𝐅𝐑𝐄𝐄 webinar to explore the human body using bioinformatics in virtual reality, examine global policies and perspectives, and discover future capabilities with Andreas Bueckle and Bruce Herr! 🧬 📆 Tuesday 28th May 2024 🕓 14:00 BST | 09:00 EDT 🖥️ Register here: https://hubs.la/Q02xxhPR0 𝐓𝐨𝐩𝐢𝐜𝐬 𝐢𝐧𝐜𝐥𝐮𝐝𝐞: ✔️ Exploring the human body using bioinformatics in virtual reality ✔️ Different global policies & perspectives ✔️ Future Capabilities #OGOmics #VirtualReality #Bioinformatics

We introduce QuST at (https://lnkd.in/g_cvdbnu), a QuPath extension designed to bridge the gap between whole slide image and spatial transcriptomic analyzing tasks. In this paper, we highlight the importance of integrating deep learning based whole slide image analysis and spatial transcriptomic analysis in understanding disease biology and the challenges in integrating these modalities due to differences in data formats and analytical methods. The QuST source code is hosted on GitHub and documentation is available at (https://lnkd.in/gEuRzVV8). #spatialtranscriptomics #wholeslideimage #qupath #digitalpathology #deeplearning

Going to #cellbio2023? Stop by the “We are Cell Biology” Dec 5, 10:30 am, Room 153C. An engaging session aimed to gather short profiles (bios, keywords, images) that folks can use to introduce #diverse scientists and their data when they teach! Create a slide such as this one:

Join our 𝐅𝐑𝐄𝐄 webinar to explore the human body using bioinformatics in virtual reality, examine global policies and perspectives, and discover future capabilities with Andreas Bueckle, Ph.D. and Bruce Herr! 🧬 📆 Tuesday 28th May 2024 🕓 14:00 BST | 09:00 EDT 🖥️ Register here: https://hubs.la/Q02xxjqK0 𝐓𝐨𝐩𝐢𝐜𝐬 𝐢𝐧𝐜𝐥𝐮𝐝𝐞: ✔️ Exploring the human body using bioinformatics in virtual reality ✔️ Different global policies & perspectives ✔️ Future Capabilities #OGOmics #VirtualReality #Bioinformatics

Space Biosciences Events: Events Upcoming Events and Activities To explore deeper into space, it is crucial that we learn how our bodies change and adapt to the unique environment of space. The Open Science Data Repository (a combination of GeneLab and Ames Life Sciences Data Archive – ALSDA – datasets) helps scientists understand how the fundamental building blocks […]

In the intricate universe of single-cell data, identifying and classifying cell types accurately can be like finding a needle in a haystack. Join Rosalind's Director of Customer Success Ryan S. Friese, Ph.D. and Bioinformatics Scientist Isabella Vahrson as as they discuss challenges associated with cell type prediction, explain our selection process and showcase how this is implemented in ROSALIND. Hope to see you there, sign up below. https://bit.ly/3ZAX7cy

🔬 Are you working on single-cell spatial and want to see how others tackle spatial data analysis? Join our webinar to learn from Holger Heyn's lab on how they are handling single-cell spatial whole transcriptome data for accurate and interpretable CosMx SMI results 👉https://lnkd.in/gcVcQKgt Discover AtoMx Spatial Informatics Platform, a cloud-based solution for spatial biology. No matter your computational experience, sign up to learn to analyze and visualize large spatial multiomics data. #SingleCell #SpatialBiology #DataAnalysis #Multiomics This post may include information regarding CosMx™ SMI products for RNA detection, which products are not available in the Federal Republic of Germany, as further described here: https://lnkd.in/gNX2ptVr

Spatial Biology Data Analysis Solutions (recorded session) Facing challenges when it comes to your spatial biology datasets? Have you ever wondered, "The images are stunning, but how do I extract the data?" or "What's the best way to extract data from my files?" or perhaps, “I just designed my imaging panel, now what?” Watch our interactive webinar, where our experts delve into a comprehensive exploration of Imaging Mass Cytometry™ datasets. They will also go over various pipelines for cell segmentation and share invaluable tips and tricks on staining techniques, sample treatments and data acquisition, while introducing you to different analysis software solutions. This session is designed to ensure participants gain a firm grasp of acquiring high-quality data and understand diverse pipeline and software options, thus empowering you to make informed choices. Data Zero to Data Hero: Unlock the power of data analysis | Webinar Registration https://lnkd.in/emauSmZT #spatialbiology #imagingmasscytometry #cytof #tissueimaging #pathology #histology #dataanalysis

Such a powerful tool for those working with scRNA-seq data!

Integrating spatial transcriptomics data across different conditions, technologies and developmental stages https://lnkd.in/eB7sGWhP