Vlad Vinogradov’s Post

View profile for Vlad Vinogradov, graphic

Scaling to billion-size models & molecular libraries at Bioptic.io

🥇 Last week, I won a GOLD medal in a Kaggle competition of Leash Bio, placing 8th out of around 2000 teams! This was my second competition in the field of life sciences, where I earned a GOLD. And now I have become a Kaggle Master! The problem was to predict which drug-like small molecules (chemicals) will bind to three possible protein targets, which in turn may help develop a drug against blood pressure, diabetes progression, and cancer. There were 133 million molecules being tested in the wet lab that participants used for training and evaluation of the ML models. See the full description of the competition: https://lnkd.in/dR2eDpaW It's been a while since I've seen the lack of proper evaluation of ML models in Drug Discovery. This is one of the proofs, among a few others, that we had in our company showing that the similarity of molecules is an important factor that should be considered for preparing the benchmarks in at least the tasks of small molecule properties prediction. See my full solution, which is built with SMILES-based transformer models, here: https://lnkd.in/dz8Hw5EB. I also credit Simon Steshin for his public work on the critical assessment of ML methods for molecule property prediction tasks.

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William Webster, CPA

Private Equity | Venture Capital | Mergers & Acquisitions

1mo

This is so cool Debra Webster

🖥🧪💊💡 Gustavo Seabra

Computational Chemistry, Artificial Intelligence and Structure-Based Drug Discovery | Research Associate Professor | Department of Medicinal Chemistry & CNPD3 | College of Pharmacy | University of Florida

1mo

Congratulations!

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Anton Chislov

CTO | Engineering Manager | AI in Logistics & Medicine

1mo

Congrats!

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Islam Midov, CFA

Tech | Entrepreneur | VC | Forbes 30u30 nominee

1mo

wow! Well done!

Olesya N.

Global Human Resources Director | Help people's dreams and business' plans unite | Workplace Happiness, Diversity & Inclusion Ambassador

1mo

Congratulations Vlad! Great achievement 🥳

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