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  • Appendix I: IA IUPAC Nucleotide Ambiguity Codes

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    codon table

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    Codon Table

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    codon table

    Copyright:

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    Download as PDF, TXT or read online from Scribd
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    93 views2 pages

    Appendix I: IA IUPAC Nucleotide Ambiguity Codes

    Uploaded by

    peeps007
    codon table

    Copyright:

    Attribution Non-Commercial (BY-NC)
    Download as PDF, TXT or read online from Scribd
    Flag for inappropriate content
    Download as pdf or txt
    of 2

    Bioinformatics for Geneticists. Edited by Michael R. Barnes and Ian C.

    Gray
    Copyright ¶ 2003 John Wiley & Sons, Ltd.
    ISBNs: 0-470-84393-4 (HB); 0-470-84394-2 (PB)

    APPENDIX I

    IA IUPAC Nucleotide Ambiguity Codes


    IUPAC Code Meaning Complement
    A A T
    C C G
    G G C
    T/U T A
    M A or C K
    R A or G Y
    W A or T W
    S C or G S
    Y C or T R
    K G or T M
    V A or C or G B
    H A or C or T D
    D A or G or T H
    B C or G or T V
    N G or A or T or C N

    IB IUPAC Amino Acid Codes


    IUPAC Amino Three Letter Code Amino Acid
    Acid Code
    A Ala Alanine
    C Cys Cysteine
    D Asp Aspartate
    E Glu Glutamate
    F Phe Phenylalanine
    G Gly Glycine
    H His Histidine
    I Ile Isoleucine
    K Lys Lysine
    L Leu Leucine
    M Met Methionine
    N Asn Asparagine
    P Pro Proline
    Q Gln Glutamine
    R Arg Arginine
    380 APPENDIX I

    IUPAC Amino Three Letter Code Amino Acid


    Acid Code
    S Ser Serine
    T Thr Threonine
    V Val Valine
    W Trp Tryptophan
    Y Tyr Tyrosine

    IC Human Codon Usage Table


    Second Codon
    First Last
    Codon U C A G Codon
    Phe Ser Tyr Cys U
    Phe Ser Tyr Cys C
    U
    Leu Ser Stop Stop A
    Leu Ser Stop Trp G
    Leu Pro His Arg U
    Leu Pro His Arg C
    C
    Leu Pro Gln Arg A
    Leu Pro Gln Arg G
    Ile Thr Asn Ser U
    Ile Thr Asn Ser C
    A
    Ile Thr Lys Arg A
    Met Thr Lys Arg G
    Val Ala Asp Gly U
    Val Ala Asp Gly C
    G
    Val Ala Glu Gly A
    Val Ala Glu Gly G

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