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Tutorial 9 PDF
Tutorial 9 PDF
Overview
In this session we will learn on the value of a type of secondary prevention called
screening. Screening is a way of improving patient outcomes by detecting a disease at
an earlier, more treatable stage, or by avoiding recurrence of disease. In order to
provide effective curative or preventive health care, it is needed to distinguish between
individuals who have a disease and those who do not.
For this purpose, several tests such as physical examination; biochemical assay of blood,
urine and other body fluids; radiography; ultrasonography; cytology; and histopathology.
One question we need to answer is how good these tests are at separating individuals
with and without the disease in question. Unfortunately, several screening and
diagnostic tests are liable to error. In this chapter, you will learn about certain statistical
methods for assessing the quality of screening and diagnostic tests to help you make
informed decisions about their use and interpretation.
Learning objective
After working through this session, students were expected to be able to:
Describe and calculate the measures of validity of a diagnostic test
Explain the relationship between prevalence and predictive values
List the World Health Organization guidelines for assessing appropriateness of
screening
Describe and calculate the measure of reliability of a test.
We cannot expect sensitivity and specificity values to be equally high for a given test,
and the importance of each measure will depend on the disease in question. In the case
of a communicable disease, for example, specificity may be considered more important
as a false positive case may have less of a public health impact than a false negative
which could result in continued transmission of the disease. Estimation of sensitivity and
specificity will depend on the definition that is used for a true positive. This may be
relatively easy when the test is for a dichotomous variable where a disease is considered
to be either present or absent. For a continuous variable, such as blood pressure, the
definition of a positive case needs to be determined and be evidence-based; this may be
by carrying out a further gold standard diagnostic test, or by following up participants
to see who develops clinical manifestations of disease.
Predictive values
Another important measure for a screening test is the predictive value. The positive
predictive value of mammography, for example, will tell a woman how likely it is that
she has breast cancer after a positive mammogram. The negative predictive value will
tell a woman the probability is that she truly does not have breast cancer if the
mammogram is negative. Predictive values measure whether or not the individual
actually has the disease, given the results of the screening test, and are determined by
the validity of a test (specificity and sensitivity) and the characteristics of the population
being tested (particularly the prevalence of preclinical disease). The more sensitive a
test, the less likely it is that an individual with a negative result will have the disease, so
the greater the negative predictive value. The more specific a test, the less likely an
individual with a positive test will be free from disease and the greater the positive
predictive value. However, if the disease is rare, and the population is at a low risk of
disease, the positive results are likely to be mostly false positives. Table 12.1
summarizes the relationship between the results of a screening test and the actual
presence of disease as determined by the result of a subsequent confirmatory
diagnostic test (the gold standard).
In the table, a is the number of subjects who have the condition and are found positive
by the test (true positives), b the number of subjects who do not have the condition but
are found positive by the test (false positives), c the number of subjects who have the
condition but are found negative by the test (false negatives) and d the number of
subjects who do not have the condition and are found negative by the test (true
negatives).
Reliability Test
Reliability mean that the results of a test or measure are identical or closely similar each
time it is conducted. When there was a different result between two test (with similar
equipment or tool) it means there was a variation between the first and second test
conducted. There were 3 kind of variation :
1. Intra subject variation
The values obtained in measuring many human characteristics often vary over
time, even during a short period. Variability over time is considerable. This, as
well as the conditions under which certain tests are conducted (e.g.,
postprandially or postexercise, at home or in a physician's office), clearly can
lead to different results in the same individual. Therefore, in evaluating any test
result, it is important to consider the conditions under which the test was
performed, including the time of day.
2. Intra observer variation
Sometimes variation occurs between two or more readings of the same test
results made by the same observer. For example, a radiologist who reads the
same group of X-rays at two different times may read one or more of the X-rays
differently the second time. Tests and examinations differ in the degree to which
subjective factors enter into the observer's conclusions, and the greater the
subjective element in the reading, the greater the intra observer variation in
readings is likely to be.
3. Inter observer variation
Another important consideration is variation between observers. Two examiners
often do not derive the same result. The extent to which observers agree or
disagree is an important issue, whether we are considering physical
examinations, laboratory tests, or other means of assessing human
characteristics. We therefore need to be able to express the extent of agreement
in quantitative terms. We measure this variation using kappa method.
Kappa Method
Kappa statistic was used to measure agreement between two observers to know
whether the agreement happen by chance or not. Because percent agreement is also
significantly affected by the fact that even if two observers use completely different
criteria to identify subjects as positive or negative, we would expect the observers to
agree solely as a function of chance.
Observer A
Observer B Total
+ -
+ a b a+b
- c d c+d
Total a+c b+d a+b+c+d
( ) ( )
Kappa = 100% ( )
+ +
(( )(+))+(( )(+))
+ +++ +++
( ) ( )
+++ +++
Kappa = + +
(( )(+))+(( )(+))
+++ +++
100% ( )
+++
Landis and Koch, suggested that a kappa greater than 0.75 represents excellent
agreement beyond chance, a kappa below 0.40 represents poor agreement, and a
kappa of 0.40 to 0.75 represents intermediate to good agreement.
Activity 1
In a hypothetical study, 1000 patients attending a hospital general outpatient
department were tested for diabetes using the following two tests:
fasting blood sugar (FBS)
glucose tolerance test (GTT)
There were 100 patients who had a positive GTT, and they were classified as true cases
of diabetes. There were also 140 patients with an FBS of at least 6 mmol/l (the cut-off
point to distinguish people with diabetes from those who do not have diabetes). Among
these 140 patients, only 98 were true cases of diabetes (i.e. only 98 had a positive GTT
as well).
1. What are the sensitivity, specificity, and positive and negative predictive values
of the FBS test in this study population?
2. When the cut-off point for the FBS was raised to 7 mmol/l, the sensitivity of the
test decreased to 95% and the specificity increased to 98% in the hypothetical
study population.
Calculate the positive predictive value and false negative error rate of FBS at this
cut-off point.
3. The FBS test and GTT were used in a hypothetical community survey to screen
for diabetes. Among 1000 people surveyed, 40 people had a positive GTT for
diabetes and were classified as true cases of diabetes. An FBS cut-off value of 6
mmol/l was used to distinguish between people with and without diabetes; you
can assume that at this cutoff point the FBS had a sensitivity of 98% and
specificity of 95%.
What are the positive predictive value and false negative error rate of FBS in this
survey?
4. Why is the positive predictive value different from that observed in the
hypothetical hospital-based study? Assume that if the cut-off point of FBS is
increased to 7.5 mmol/l, the sensitivity is 90% and the specificity is 99% for
diagnosing diabetes.
5. What are the positive predictive value and the false negative error rate of FBS if
the cut-off point of 7.5 mmol/l is used to screen for diabetes in this community?
6. If you were asked to fix the cut-off point of FBS for a survey of your community
would you select 6 mmol/l or 7 mmol/l? Give reasons for your answer.
Activity 2
A physical examination was used to screen for breast cancer in 2500 women with biopsy
proven adenocarcinoma of the breast and in 5000 age and race matched control women.
The results of the physical examination were positive (mass was palpated) in 1800 cases
and 800 control women, all of whom showed no evidence of cancer at biopsy.
Calculate the sensitivity, specificity and positive predictive value of the physical
examination.
Activity 3
A study was carried out in Hospital X to investigate the reliability of nutrition screening
tool. Two Dietisien were asked to determine the risk of malnutrition among 100 patients
pre-surgery in Hospital X by using Nutritional Risk Screening 2002 (NRS). The
classification is divided into risk and not risk. The comparison of their classification is
shown in following table:
Dietisien 2 Total
Dietisien 1 Risk Not Risk
Risk 40 20 60
Not Risk 10 30 40
Total 50 50 100
1. The simple, overall percent agreement between two dietisien out of the total is
2. The overall percent agreement between the two dietitian, removing the result of
NRS 2002 that both dietisien classified as not risk is
3. The value kappa is:
4. This kappa represents which kind agreement? ( excellent or intermediate to good or
poor)