UserGuide For FeptideDB
UserGuide For FeptideDB
Peptide Search
3. Press submit data when form is completed, or use the reset button for
clearing data.
Digestion with enzyme
PDB File
Bioactive peptides
Users can either (A) view results of each enzyme and obtain a new pop-
up window or (B) download the summarized file by choosing “Export
results” and obtain the result_file.txt.
B
A
A view: Results of in silico enzyme digestion are displayed in the pop-up
window. BP fragments containing 2-10 residues are automatically
generated with the FeptideDB-3D structure prediction tool. These
constructed structures are written out and are available to download in
PDB file format.
B Export results: This result_file.txt is saved in table format, which
contains the following data: type of enzyme, digested peptide, position of
cleavage, activity group, number of digested peptide and score. This file
can be opened by any worksheet program.
Protein-ligand docking
Further information about reading dlg file can be found at the following
links: http://autodock.scripps.edu/faqs-help/faq
http://autodock.scripps.edu/faqs-help/faq/is-there-a-way-to-save-a-
protein-ligand-complex-as-a-pdb-file-in-autodock