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G.R. No. 211289
G.R. No. 211289
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SECOND DIVISION
DECISION
Before the Court is a petition for review on certiorari under Rule 45 of the Rules of Court seeking to reverse and set
aside the September 30, 2013 Decision1 and the February 10, 2014 Resolution2 of the Court of Tax Appeals (CTA)
En Banc in CTA EB No. 951, which affirmed the August 3, 2012 Decision3 and the October 5, 2012 Resolution of the
CTA Third Division (CTA Division).
Factual background
Respondent La Flor dela Isabela, Inc. (La Flor) is a domestic corporation duly organized and existing under
Philippine Law. It filed monthly returns for the Expanded Withholding Tax (EWT) and Withholding Tax on
Compensation (WTC) for calendar year 2005.4
On September 3, 2008, La Flor, through its president, executed a Waiver of the Statute of Limitations (Waiver)5 in
connection with its internal revenue liabilities for the calendar year ending December 31, 2005. On February 16,
2009, it executed another Waiver6 to extend the period of assessment until December 31, 2009.
On November 20, 2009, La Flor received a copy of the Preliminary Assessment Notice for deficiency taxes for the
taxable year 2005. Meanwhile, on December 2, 2009, it executed another Waiver.7
On January 7, 2010, La Flor received the following Formal Letter of Demand and Final Assessment Notices (FANs):
(1) LTEADI-II CP-05- 00007 for penalties for late filing and payment of WTC; (2) LTADI-II CP 05-00008 for penalties
for late filing and payment of EWT; (3) LTADI-II WE-05-00062 for deficiency assessment for EWT; and (4) LTEADI-II
WC- 05-00038 for deficiency assessment for WTC. The above-mentioned assessment notices were all dated
December 17, 2009 and covered the deficiency taxes for the taxable year 2005.8
On January 15, 2010, La Flor filed its Letter of Protest contesting the assessment notices. On July 20, 2010,
petitioner Commissioner of Internal Revenue (CIR) issued the Final Decision on Disputed Assessment (FDDA)
involving the alleged deficiency withholding taxes in the aggregate amount of ₱6,835,994.76. Aggrieved, it filed a
petition for review before the CTA Division.
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In its August 3, 2012 Decision, the CTA Division ruled in favor of La Flor and cancelled the deficiency tax
assessments against it. It noted that based on the dates La Flor had filed its returns for EWT and WTC, the CIR had
until February 15, 2008 to March 1, 2009 to issue an assessment pursuant to the three-year prescriptive period
under Section 203 of the National Internal Revenue Code (NIRC). The CTA Division pointed out that the
assessment was issued beyond the prescriptive period considering that the CIR issued the FANs only on December
17, 2009. Thus, it posited that the assessment was barred by prescription.
On the other hand, the CTA Division ruled that the Waivers entered into by the CIR and La Flor did not effectively
extend the prescriptive period for the issuance of the tax assessments. It pointed out that only the February 16,
2009 Waiver was stipulated upon and the Waivers dated September 3, 2008 and December 2, 2009 were never
presented or offered in evidence. In addition, the CTA Division highlighted that the Waiver dated February 16, 2009
did not comply with the provisions of Revenue Memorandum Order (RMO) No. 20-90 because it failed to state the
nature and amount of the tax to be assessed.
Thus, it disposed:
WHEREFORE, the Petition for Review is hereby GRANTED. Accordingly, the Formal Letter of
1awp++i1
SO ORDERED.9
The CIR moved for reconsideration but it was denied by the CT A Division in its October 5, 2012 Resolution.10
Undeterred, it filed a Petition for Review11 before the CTA En Banc.
In its September 30, 2013 Decision, the CTA En Banc affirmed the Decision of the CTA Division. The tax court
agreed that the EWT and WTC assessments were barred by prescription. It explained that the Waivers dated
September 3, 2008 and December 2, 2009 were inadmissible because they were never offered in evidence. The
CTA En Banc added that these documents were neither incorporated in the records nor duly identified by testimony.
It also elucidated that the Waiver dated February 16, 2009 was defective because it failed to comply with RMO No.
20-90 as it did not specify the kind and amount of tax involved. As such, the CTA En Banc concluded that the
prescriptive period for the assessment of EWT and WTC for 2005 was not extended in view of the inadmissibility
and invalidity of the Waivers between the CIR and La Flor. Thus, it disposed:
WHEREFORE, premises considered, the assailed Decision dated August 3, 2012 and the Resolution
dated October 5, 2012 are AFFIRMED. The Petition for Review is hereby DISMISSED.
SO ORDERED.12
The CIR moved for reconsideration, but it was denied by the CTA En Banc in its February 10, 2014 Resolution.
Issues
WHETHER THE PRESCRIPTIVE PERIOD UNDER SECTION 203 OF THE NIRC APPLIES TO EWT AND WTC
ASSESSMENTS; and
II
WHETHER LA FLOR'S EWT AND WTC ASSESSMENTS FOR 2005 WERE BARRED UY PRESCRIPTION.
The CIR argued that the prescriptive period under Section 203 of the NIRC does not apply to withholding agents
such as La Flor. It explained that the amount collected from them is not the tax itself but rather a penalty. The CIR
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pointed out that the provision of Section 203 of the NIRC only mentions assessment of taxes as distinguished from
assessment of penalties. It highlighted that La Flor was made liable for EWT and WTC deficiencies in its capacity as
a withholding agent and not in its personality as a taxpayer.
On the other hand, the CIR maintained that even applying the periods set in Section 203 of the NIRC, the EWT and
WTC assessment of La Flor had not yet prescribed. It pointed out that La Flor had executed three Waivers
extending the prescriptive period under the NIRC. The CIR lamented that the CT A erred in disregarding them
because evidence not formally offered may be considered if they form part of the records. It noted that in the Answer
it filed before the CTA Division, the subject Waivers were included as annexes. In addition, the CIR assailed that
failure to comply with RMO No. 20-90 does not invalidate the Waivers.
In its Comment13 dated August 15, 2014, La Flor countered that the CIR's petition for review should be denied
outright for procedural infirmities. It pointed out that the petition failed to comply with Bar Matter (B.M.) No. 1922
because the date of issue of the Mandatory Continuing Legal Education (MCLE) compliance of the counsels of the
CIR was not indicated. In addition, La Flor noted that the petition for review did not observe Section 2, Rule 7 of the
Rules of Court requiring the paragraphs to be numbered. Further, it asserted that the assessment of the EWT and
WTC had prescribed because it went beyond the prescriptive period provided under Section 203 of the NIRC. La
Flor also assailed that the Waivers should not be considered because they were neither offered in evidence nor
complied with the requirements under RMO No. 20-90.
In its Reply14 dated February 18, 2015, the CIR brushed aside the allegations of procedural infirmities of its petition
for review. It elucidated that failure to indicate the date of issue of the MCLE compliance is no longer a ground for
dismissal and that it had stated the MCLE certificate compliance numbers of its counsels. The CIR posited that the
Rules of Court does not penalize the failure to number the paragraphs in pleadings.
Other than challenging the merits of the CIR's petition, La Flor believes that the former' s petition for review on
certiorari should be dismissed outright on procedural grounds. It points out that failure to include the date of issue of
the MCLE compliance number of a counsel in a pleading is a ground for dismissal. Further, La Flor highlights that
the paragraphs in the CIR's petition for review on certiorari were not numbered.
In People v. Arrojado,15 the Court had already clarified that failure to indicate the number and date of issue of the
counsel's MCLE compliance will no longer result in the dismissal of the case, to wit:
In any event, to avoid inordinate delays in the disposition of cases brought about by a counsel's failure
to indicate in his or her pleadings the number and date of issue of his or her MCLE Certificate of
Compliance, this Court issued an En Banc Resolution, dated January 14, 2014 which amended B.M.
No. 1922 by repealing the phrase "Failure to disclose the required information would cause the
dismissal of the case and the expunction of the pleadings from the records" and replacing it with
"Failure to disclose the required information would subject the counsel to appropriate penalty and
disciplinary action." Thus, under the amendatory Resolution, the failure of a lawyer to indicate in his or
her pleadings the number and date of issue of his or her MCLE Certificate of Compliance will no longer
result in the dismissal of the case and expunction of the pleadings from the records. Nonetheless, such
failure will subject the lawyer to the prescribed fine and/or disciplinary action.
On the other hand, even La Flor recognizes that Section 2, Rule 7 of the Rules of Court does not provide for any
punishment for failure to number the paragraphs in a pleading. In short, the perceived procedural irregularities in the
petition for review on certiorari do not justify its outright dismissal. Procedural rules are in place to facilitate the
adjudication of cases and avoid delay in the resolution of rival claims.16 In addition, courts must strive to resolve
cases on their merits, rather than summarily dismiss them on technicalities.17 This is especially true when the
alleged procedural rules violated do not provide any sanction at all or when the transgression thereof does not result
in a dismissal of the action.
Nevertheless, the Court finds no reason to reverse the CTA in invalidating the assessments against La Flor.
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Section 203 of the NIRC provides for the ordinary prescriptive period for the assessment and collection of taxes, to
wit:
SEC. 203. Period of Limitation Upon Assessment and Collection. — Except as provided in Section 222,
internal revenue taxes shall be assessed within three (3) years after the last day prescribed by law for
the filing of the return, and no proceeding in court without assessment for the collection of such taxes
shall be begun after the expiration of such period: Provided, That in case where a return is filed beyond
the period prescribed by law, the three (3)-year period shall be counted from the day the return was
filed. For purposes of this Section, a return filed before the last day prescribed by law for the filing
thereof shall be considered as filed on such last day. (Emphasis supplied)
On the other hand, Section 222(a)18 of the NIRC provides for instances where the ordinary prescriptive period of
three years for the assessment and collection of taxes is extended to 10 years, i.e., false return, fraudulent returns,
or failure to file a return. In short, the relevant provisions in the NIRC concerning the prescriptive period for the
assessment of internal revenue taxes provide for an ordinary and extraordinary period for assessment.
The CIR, however, forwards a novel theory that Section 203 is inapplicable in the present assessment of EWT and
WTC deficiency against La Flor. It argues that withholding taxes are not contemplated under the said provision
considering that they are not internal revenue taxes but are penalties imposed on the withholding agent should it fail
to remit the proper amount of tax withheld.
In Chamber of Real Estate and Builders' Associations, Inc. v. Hon. Executive Secretary Romulo,19 the Court had
succinctly explained the withholding tax system observed in our jurisdiction, to wit:
We have long recognized that the method of withholding tax at source is a procedure of collecting
income tax which is sanctioned by our tax laws. The withholding tax system was devised for three
primary reasons: first, to provide the taxpayer a convenient manner to meet his probable income tax
liability; second, to ensure the collection of income tax which can otherwise be lost or substantially
reduced through failure to file the corresponding returns and third, to improve the government's cash
flow. This results in administrative savings, prompt and efficient collection of taxes, prevention of
delinquencies and reduction of governmental effort to collect taxes through more complicated means
and remedies.
Under the existing withholding tax system, the withholding agent retains a portion of the amount received by the
income earner. In turn, the said amount is credited to the total income tax payable in transactions covered by the
EWT. On the other hand, in cases of income payments subject to WTC and Final Withholding Tax, the amount
withheld is already the entire tax to be paid for the particular source of income. Thus, it can readily be seen that the
payee is the taxpayer, the person on whom the tax is imposed, while the payor, a separate entity, acts as the
government's agent for the collection of the tax in order to ensure its payment.20
As a consequence of the withholding tax system, two distinct liabilities arise — one for the income earner/payee and
another for the withholding agent. In Rizal Commercial Banking Corporation v. Commissioner of Internal Revenue,21
the Court elaborated:
It is, therefore, indisputable that the withholding agent is merely a tax collector and not a taxpayer, as
elucidated by this Court in the case of Commissioner of Internal Revenue v. Court of Appeals, to wit:
In the operation of the withholding tax system, the withholding agent is the payor, a
separate entity acting no more than an agent of the government for the collection of the
tax in order to ensure its payments; the payer is the taxpayer — he is the person subject
to tax imposed by law; and the payee is the taxing authority. In other words, the
withholding agent is merely a tax collector, not a taxpayer. Under the withholding system,
however, the agent-payor becomes a payee by fiction of law. His (agent) liability is direct
and independent from the taxpayer, because the income tax is still imposed on and due
from the latter. The agent is not liable for the tax as no wealth flowed into him — he
earned no income. The Tax Code only makes the agent personally liable for the tax arising
from the breach of its legal duty to withhold as distinguished from its duty to pay tax since:
"the government's cause of action against the withholding agent is not for the
collection of income tax, but for the enforcement of the withholding provision
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Based on the foregoing, the liability of the withholding agent is independent from that of the taxpayer.
The former cannot be made liable for the tax due because it is the latter who earned the income
subject to withholding tax. The withholding agent is liable only insofar as he failed to perform his duty to
withhold the tax and remit the same to the government. The liability for the tax, however, remains with
the taxpayer because the gain was realized and received by him. (Citations omitted)
It is true that withholding tax is a method of collecting tax in advance22 and that a withholding tax on income
necessarily implies that the amount of tax withheld comes from the income earned by the taxpayer/payee.23
Nonetheless, the Court does not agree with the CIR that withholding tax assessments are merely an imposition of a
penalty on the withholding agent, and thus, outside the coverage of Section 203 of the NIRC.
The CIR cites National Development Company v. Commissioner of Internal Revenue24 as basis that withholding
taxes are only penalties imposed on the withholding agent, to wit:
The petitioner also forgets that it is not the NDC that is being taxed. The tax was due on the interests
earned by the Japanese shipbuilders. It was the income of these companies and not the Republic of
the Philippines that was subject to the tax the NDC did not withhold.
In effect, therefore, the imposition of the deficiency taxes on the NDC is a penalty for its failure to
withhold the same from the Japanese shipbuilders. Such liability is imposed by Section 53(c) of the Tax
Code, thus:
Section 53(c). Return and Payment. — Every person required to deduct and withhold any
tax under this section shall make return thereof, in duplicate, on or before the fifteenth day
of April of each year, and, on or before the time fixed by law for the payment of the tax,
shall pay the amount withheld to the officer of the Government of the Philippines
authorized to receive it. Every such person is made personally liable for such tax, and is
indemnified against the claims and demands of any person for the amount of any
payments made in accordance with the provisions of this section. (As amended by Section
9, R.A. No. 2343.)
In Philippine Guaranty Co. v. The Commissioner of Internal Revenue and the Court of Tax Appeals, the
Court quoted with approval the following regulation of the BIR on the responsibilities of withholding
agents:
In case of doubt, a withholding agent may always protect himself by withholding the tax
due, and promptly causing a query to be addressed to the Commissioner of Internal
Revenue for the determination whether or not the income paid to an individual is not
subject to withholding. In case the Commissioner of Internal Revenue decides that the
income paid to an individual is not subject to withholding, the withholding agent may
thereupon remit the amount of tax withheld. (2nd par., Sec. 200, Income Tax Regulations).
The petitioner was remiss in the discharge of its obligation as the withholding agent of the government
and so should be held liable for its omission.
A careful analysis of the above-quoted decision, however, reveals that the Court did not equate withholding tax
assessments to the imposition of civil penalties imposed on tax deficiencies. The word "penalty" was used to
underscore the dynamics in the withholding tax system that it is the income of the payee being subjected to tax and
not of the withholding agent. It was never meant to mean that withholding taxes do not fall within the definition of
internal revenue taxes, especially considering that income taxes are the ones withheld by the withholding agent.
Withholding taxes do not cease to become income taxes just because it is collected and paid by the withholding
agent.
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The liability of the withholding agent is distinct and separate from the tax liability of the income earner. It is premised
on its duty to withhold the taxes paid to the payee. Should the withholding agent fail to deduct the required amount
from its payment to the payee, it is liable for deficiency taxes and applicable penalties. In Commissioner of Internal
Revenue v. Procter & Gamble Philippine Manufacturing Corporation25 the Court explained:
It thus becomes important to note that under Section 53 (c) of the NIRC, the withholding agent who is
"required to deduct and withhold any tax" is made "personally liable for such tax" and indeed is
indemnified against any claims and demands which the stockholder might wish to make in questioning
the amount of payments effected by the withholding agent in accordance with the provisions of the
NIRC. The withholding agent, P&G-Phil., is directly and independently liable for the correct
amount of the tax that should be withheld from the dividend remittances. The withholding agent
is, moreover, subject to and liable for deficiency assessments, surcharges and penalties should
the amount of the tax withheld be finally found to be less than the amount that should have
been withheld under law.
A "person liable for tax" has been held to be a "person subject to tax" and properly considered a
"taxpayer." The terms "liable for tax" and "subject to tax" both connote legal obligation or duty to pay a
tax. It is very difficult, indeed conceptually impossible, to consider a person who is statutorily made
"liable for tax" as not "subject to tax." By any reasonable standard, such a person should be regarded
as a party in interest, or as a person having sufficient legal interest, to bring a suit for refund of taxes he
believes were illegally collected from him. (Emphasis supplied)
Thus, withholding tax assessments such as EWT and WTC clearly contemplate deficiency internal revenue taxes.
Their aim is to collect unpaid income taxes and not merely to impose a penalty on the withholding agent for its
failure to comply with its statutory duty. Further, a holistic reading of the Tax Code reveals that the CIR's
interpretation of Section 203 is erroneous. Provisions of the NIRC itself recognize that the tax assessment for
withholding tax deficiency is different and independent from possible penalties that may be imposed for the failure of
withholding agents to withhold and remit taxes. For one, Title X, Chapter I of the NIRC provides for additions to the
tax or deficiency tax and is applicable to all taxes, fees and charges under the Tax Code.
xxxx
(b) If the withholding agent is the Government or any of its agencies, political subdivisions or
instrumentalities, or a government-owned or controlled corporation the employee thereof responsible
for the withholding and remittance of the tax shall be personally liable for the additions to the tax
prescribed herein.
SEC. 251. Failure of a Withholding Agent to Collect and Remit Tax. — Any person required to withhold,
account for and remit any tax imposed by this Code or who willfully fails to withhold such tax, or
account for and remit such tax, or aids or abets in any manner to evade any such tax or the payment
thereof, shall, in addition to other penalties provided for under this Chapter, be liable upon conviction to
a penalty equal to the total amount of the tax not withheld, or not accounted for and remitted.
Based on the above-cited provisions, it is clear to see that the "penalties" are amounts collected on top of the
deficiency tax assessments including deficiency withholding tax assessments. Thus, it was wrong for the CIR to
restrict the EWT and WTC assessments against La Floras only for the purpose of imposing penalties and not for the
collection of internal revenue taxes.
The CIR further argues that even if Section 203 of the NIRC was applicable, the assessments against La Flor had
yet to prescribe. It points out that La Flor had executed three Waivers to extend the statutory prescriptive period.
The CIR insists that the Waivers should have been considered even if they were not offered in evidence because
the CTA is not strictly governed by technical rules of evidence. It adds that the requirements under RMO No. 20-90
are not mandatory.
In Commissioner of Internal Revenue v. Systems Technology Institute, Inc.,26 the Court had ruled that waivers
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extending the prescriptive period of tax assessments must be compliant with RMO No. 20-90 and must indicate the
nature and amount of the tax due, to wit:
These requirements are mandatory and must strictly be followed. To be sure, in a number of
cases, this Court did not hesitate to strike down waivers which failed to strictly comply with the
provisions of RMO 20-90 and RDAO 05-01.
xxxx
The Court also invalidated the waivers executed by the taxpayer in the case of Commissioner of
Internal Revenue v. Standard Chartered Bank, because: (1) they were signed by Assistant
Commissioner-Large Taxpayers Service and not by the CIR; (2) the date of acceptance was not shown;
(3) they did not specify the kind and amount of the tax due; and (4) the waivers speak of a request for
extension of time within which to present additional documents and not for reinvestigation and/or
reconsideration of the pending internal revenue case as required under RMO No. 20-90.
Tested against the requirements of RMO 20-90 and relevant jurisprudence, the Court cannot but agree
with the CTA's finding that the waivers subject of this case suffer from the following defects:
xxxx
3. Similar to Standard Chartered Bank, the waivers in this case did not specify the kind of
tax and the amount of tax due. It is established that a waiver of the statute of limitations is
a bilateral agreement between the taxpayer and the BIR to extend the period to assess or
collect deficiency taxes on a certain date. Logically, there can be no agreement if the
kind and amount of the taxes to be assessed or collected were not indicated. Hence,
specific information in the waiver is necessary for its validity. (Emphasis supplied)
In the present case, the September 3, 2008, February 16, 2009 and December 2, 2009 Waivers failed to indicate
the specific tax involved and the exact amount of the tax to be assessed or collected. As above-mentioned, these
details are material as there can be no true and valid agreement between the taxpayer and the CIR absent these
information. Clearly, the Waivers did not effectively extend the prescriptive period under Section 203 on account of
their invalidity. The issue on whether the CTA was correct in not admitting them as evidence becomes immaterial
since even if they were properly offered or considered by the CTA, the same conclusion would be reached — the
assessments had prescribed as there was no valid waiver.
WHEREFORE, the petition is DENIED. The September 30, 2013 Decision and the February 10, 2014 Resolution of
the Court of Tax Appeals En Banc in CTA EB No. 951 are AFFIRMED.
SO ORDERED.
Carpio, Senior Associate Justice (Chairperson), Perlas-Bernabe, Caguioa, and Hernando,* JJ., concur.
Footnotes
*
Additional Member per S.O. No. 2630 dated December 18, 2018.
1
Penned by Associate Justice Juanito C. Castafteda, Jr., with Presiding Justice Roman G. de! Rosario and
Associate Justices Lovell R. Bautista, Erlinda P. Uy, Caesar A. Casanova, Esperanza R. FabonVictorino,
Cielito N. Mindaro-Grulla, Amelia R. Cotangco-Manalastas, and Ma. Belen M. RingpisLiban, concurring; rollo,
pp. 39-56.
2
Penned by Associate Justice Juanito C. Castafteda, Jr., with Associate Justices Lovell R. Bautista, Erlinda
P. Uy, Caesar A. Casanova, Esperanza R. Fabon-Victorino, Amelia R. Cotangco-Manalastas and Ma. Belen
M. Ringpis-Liban, concurring. Presiding Justice Roman G. del Rosario with a Separate Concurring Opinion
and Associate Justice Cielito N. Mindaro-Grulla, on leave; id. at 57-63.
3
Penned by Associate Justice Lovell R. Bautista, with Associate Justices Olga Palanca-Enriquez and Amelia
R. Cotangco-Manalastas, concurring; id. at 76-101.
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4
Id. at 11.
5
Id. at 72.
6
Id. at 73.
7
Id. at 74.
8
Id. at 12.
9
Id. at 99-100.
10
Penned by Associate Justice Lovell R. Bautista, with Associate Justice Olga Palanca-Enriquez, concurring.
Associate Justice Amelia R. Cotangco-Manalastas, on official leave; id. at 102-104.
11
Id. at 105-130.
12
Id. at 55.
13
Id. at 144-157.
14
Id. at 170-173.
15
772 Phil. 440, 448-449 (2015).
16
Curammeng v. People, 799 Phil. 575, 581 (2016).
17
Ching v. Cheng, 745 Phil. 93, 117 (2014).
18
SEC. 222(a) - In the case of a false or fraudulent return with intent to evade tax or of failure to file a return,
the tax may be assessed, or a proceeding in court for the collection of such tax may be filed without
assessment, at any time within ten (10) years after the discovery of the falsity, fraud or omission: Provided,
That in a fraud assessment which has become final and executory, the fact of fraud shall be judicially taken
cognizance of in the civil or criminal action for the collection thereof.
19
628 Phil. 508, 536 (2010).
20
LG Electronics Philippines, Inc. v. Commissioner of Internal Revenue, 149 Phil. 155, 181 (2014).
21
672 Phil. 514, 528-529 (2011).
22
Filipinas Synthetic Fiber Corporation v. Court of Appeals, 374 Phil. 835, 841 (1999).
23
Philippine National Bank v. Commissioner of Internal Revenue, 562 Phil. 575, 582 (2007).
24
235 Phil. 477, 485-486 (1987).
25
281 Phil. 425, 441-442 (1991), as cited in Commissioner of Internal Revenue v. Smart Communication, Inc.,
643 Phil. 550, 561-562 (2010).
26
G.R. No. 220835, July 26, 2017, 833 SCRA 285, 296-298.
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