2022 - McCarthy - Bathy - Automated High-Resolution Satellite-Derived Coastal Bathymetry Mapping
2022 - McCarthy - Bathy - Automated High-Resolution Satellite-Derived Coastal Bathymetry Mapping
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Article in International Journal of Applied Earth Observation and Geoinformation · March 2022
DOI: 10.1016/j.jag.2022.102693
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A R T I C L E I N F O A B S T R A C T
Keywords: Accurate and up-to-date maps of coastal bathymetry are fundamental for coastal resource management, com
WorldView mercial and military navigation, and aquaculture, among many applications. Existing methods for bathymetry
Chlorophyll mapping require intensive and costly field surveys or targeted aerial captures, neither of which are easily or
Turbidity
affordably replicated for repeat mapping and change monitoring. Satellite-derived bathymetry (SDB), however,
High-performance computing
offers the potential to map shallow water bodies repeatedly and efficiently with high spatial and temporal
resolution (i.e., daily-weekly at 5 m or better). One challenge to large-scale implementation of SDB lies in the
automated derivation of inherent water column properties such that they may be accurately compensated for
across a variety of depth and substrate conditions. Here we present an algorithm that leverages WorldView
(Maxar/Digital GlobeTM) satellite imagery to map the entire 3700 km2 Florida Keys (USA) island chain at 2-meter
resolution without the need for any in-situ data collections. Preprocessing included radiometric calibration,
atmospheric correction, automated deglinting, and automated detection of optically deep water, which was then
used to estimate chlorophyll-a concentration assuming that the study area is primarily comprised of Case-I water
(i.e., those where the optical signal is dominated by water, Chlorophyll-a in phytoplankton, and properties that
vary in proportion to Chlorophyll-a concentration). Estimating Chlorophyll-a concentration allowed us to
calculate the appropriate tuning coefficients used in a spectral band ratio equation for estimating bathymetry.
The entire process was fully automated from ingestion of Level-1B image to bathymetry raster output. Mapping
the Florida Keys from Key Largo to Key West required 34 WorldView images and was completed in approxi
mately 27 min for an average processing time of 47 s per image using a single GPU core (i.e., supercomputing
resources were not needed). After combining the products (mosaicking) in ArcMap, the wall-to-wall bathymetry
map was validated against a LiDAR-derived bathymetry model with over 600,000 points; results show an RMSE
of 1.95 m over depths from 0 to 15 m.
1. Introduction least the 1970s to estimate water depth in clear, shallow water. The
process is based on the observation of water-leaving radiance, knowl
Accurate and up-to-date maps of coastal bathymetry are critical for edge of light attenuation with depth in clear water, and a model cali
multiple sectors and applications, from vessel navigation to port con brated using in-situ depth measurements (Stumpf et al., 2003). More
struction, coastal resource management and urban planning amid complex approaches use radiative transfer modeling of the water body’s
accelerating sea-level rise (Mayer et al., 2018; Stocker et al., 2013). inherent optical properties (IOPs) (Hedley et al., 2005; Hughes et al.,
Traditional approaches to mapping bathymetry rely on ship soundings 2001; Kutser et al., 2020; Sandidge and Holyer, 1998). The remote
or LiDAR measurements from aerial vehicles that are costly, labor- sensing of aquatic properties includes many challenges, such as detect
intensive, and time-consuming (Li et al., 2019; Stumpf et al., 2003). ing and correcting for sun glint, wave action, high suspended sediment,
As a result, approximately 70–80% of the global coastal zone lacks ac or type of bottom (Kay et al., 2009; Martin et al., 2016).
curate bathymetry maps, let alone those of high spatio-temporal reso Many SDB efforts choose water bodies that are Case 1 (i.e.,
lution (Caballero and Stumpf, 2020; Mayer et al., 2018). phytoplankton-dominated) such that Chlorophyll-a (Chl-a) is the pri
Satellite-derived bathymetry (SDB) has existed in practice since at mary driver of light attenuation because the effect of phytoplankton on
* Corresponding author at: Oak Ridge National Laboratory, Geospatial Science and Human Security Division, Remote Sensing Group, 1 Bethel Valley Road, Oak
Ridge, TN 37830, USA.
E-mail addresses: [email protected] (M.J. McCarthy), [email protected] (D.B. Otis), [email protected] (D. Hughes), [email protected] (F.E. Muller-Karger).
https://doi.org/10.1016/j.jag.2022.102693
Received 8 November 2021; Received in revised form 5 January 2022; Accepted 18 January 2022
0303-2434/© 2022 Published by Elsevier B.V. This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
M.J. McCarthy et al. International Journal of Applied Earth Observation and Geoinformation 107 (2022) 102693
light attenuation is relatively well-constrained by decades of ocean color 2. Materials and methods
research. Therefore, recent SDB methods have focused on accounting for
attenuation due to Chl-a concentration in an image using empirical re 2.1. Study area
lationships (Li et al., 2019; Ma et al., 2021), assumptions about the
concentration (Kerr and Purkis, 2018), or by selecting “clean-water” We applied our automated algorithm to the Florida Keys, USA
images with negligible turbidity (Li et al., 2021). With the Chl-a con (Fig. 1), which spans ~183 km in length. We selected an area of 3700
centration for each image measured or assumed, a band-ratio approach km2 for mapping a target bathymetry range of 0–15 m over diverse
is then applied using coefficients tuned to account for Chlorophyll- benthic substrates (e.g. sand, coral, seagrasses, hard bottom). Much of
induced attenuation. However, “clean-water” images do not always the area has relatively clear “Case 1” waters (i.e., water column con
exist, arbitrary Chl-a concentration assumptions can produce substantial stituents are phytoplankton and co-varying variables), and was mapped
errors, and confounding factors such as sunglint can preclude accurate with LiDAR in the wake of Hurricane Irma (NOAA Hurricane Irma,
estimates of Chl-a concentration from the spectral data. We developed Florida Keys: Supplemental LiDAR & Shoreline Mapping, 2020). We
an algorithm that fully automates the preprocessing, deglinting (as matched the area covered by the LiDAR bathymetry map between Key
needed), Chl-a concentration estimation, and bathymetry mapping of 2- Largo and Key West for comparison with our satellite-derived bathym
meter resolution satellite imagery. etry products.
Recent advances in image processing and high-performance
computing have paved the way for efficient processing of large vol 2.2. WorldView imagery
umes of imagery and other data (McCarthy et al., 2018; Shelestov et al.,
2017). Simultaneous advances in site-independent SDB algorithms, We used 34 WorldView (WV) images collected by the WorldView-2
including forward physical-modeling of light attenuation with depth, (WV2) and WorldView-3 (WV3) satellite sensors owned and operated
and adaptive bathymetry estimation, no longer require field calibration by Maxar/Digital Globe™ (Table 1). WV2 and WV3 were launched in
(Kerr and Purkis, 2018; Li et al., 2019). In this study, we derived and 2009 and 2014, respectively, as polar-orbiting, push-broom multispec
applied site-agnostic algorithms to map 34 satellite images covering the tral sensors that record data in eight channels spanning the visible to
Florida Keys from Key Largo to Key West (183 km) in a fully automated near-infrared spectral range (WV3 offers additional wavelengths not
protocol. included in this study) with spatial resolution in the 1-2-meter range
depending on viewing angle. Images were ordered in Level-1B format as
GeoTIFFs.
Fig. 1. The Florida Keys study area. The map was restricted to the region bounded in red to coincide with the extent of LiDAR data and available WorldView satellite
imagery (Imagery is from ArcGIS “Imagery” basemap). (For interpretation of the references to color in this figure legend, the reader is referred to the web version of
this article.)
2
M.J. McCarthy et al. International Journal of Applied Earth Observation and Geoinformation 107 (2022) 102693
Table 1
Image name, location, and date for satellite imagery used.
Filename Lat (UL) Lat (LR) Lon (UL) Lon (LR) Year Month Day
3
M.J. McCarthy et al. International Journal of Applied Earth Observation and Geoinformation 107 (2022) 102693
4
M.J. McCarthy et al. International Journal of Applied Earth Observation and Geoinformation 107 (2022) 102693
Points tool by digitizing a bounding box for the study area and casting Table 2
points within it that were separated from each other by at least 10 m to RMSE and sample size per depth range.
avoid spatial autocorrelation. Quality control included eliminating Depth (m) RMSE (m) n
points that intersected cloud cover by digitizing clouds and removing
<15 1.95 635,081
intersected points. Additionally, DTMs featured data gaps surrounded by <12 1.90 629,169
sparse, pixelated bathymetry data, which we assumed to correspond to <10 1.85 620,387
poor LiDAR returns. We eliminated points that intersected data gaps and <8 1.73 583,292
data-sparse regions. Bathymetry values were extracted for each point <6 1.52 500,988
1.28 397,549
from our map and the DTM. Points that intersected land or contained No
<4
<2 1.16 173,431
Data from either dataset were omitted from validation. A total of
635,081 validation points were used for estimating the accuracy of the
resulting bathymetry map (Fig. 3). collections are displayed in Fig. 4. Our SDB map contains spatial pat
terns consistent with the DEM from the shallow Florida Bay region north
3. Results of the Keys to areas > 15 m. Artifacts, however, are noticeable where
images overlap. The averaging of overlapping pixels resulted in
3.1. Processing time smoother transitions than simply using one image’s pixel values, but
imperfections in preprocessing, atmospheric correction, air-water
Image processing was completed for all 34 images in 27 min, for an interface correction, and water column correction are likely to create
average processing time from ingestion of Level-1B images to output of unavoidable artifacts. Additionally, inconsistencies may be expected
mapped bathymetry of 47 s. This equated to mapping 138 km2 per where overlapping images were collected at substantially different times
minute for this study area. (e.g. over several years) and bathymetry changed.
4. Discussion
3.2. Bathymetry
This study derives and implements a fully automated algorithm for
3.2.1. Algorithm validation
mapping coastal bathymetry from 2-meter resolution satellite imagery
RMSE was calculated for the entire map using all 635,081 validation
without ground calibration data. The resulting wall-to-wall maps pro
points, as well as for 2-meter depth increments (Table 2). The overall
vide accurate bathymetry down to 15 m depth, and account for atmo
RMSE was 1.95 m (0–15 m depth), and shallow depths saw consistent
spheric attenuation, turbidity, and sun glint. We build on recent
decreased error down to the 0–2 m increment with an RMSE of 1.16 m.
advances in the estimation of Chl-a concentration from optical imagery
to account for inherent optical properties by refining algorithms to
3.2.2. Spatial patterns
automate the identification of optically deep water. Through this
Bathymetry maps from this study and previous LiDAR DEM
Fig. 3. Points used to evaluate map accuracy were created randomly throughout the map and separated from each other by 10 m. Inset shows land (i.e., positive
elevation) and gaps in the validation DEM as white space that were excluded from validation.
5
M.J. McCarthy et al. International Journal of Applied Earth Observation and Geoinformation 107 (2022) 102693
1.22–1.86 m (Li et al., 2019), and 3.829 m (Zhu et al., 2020). Further,
Fig. 5 demonstrates the consistent estimation of bathymetry patterns
between our map and the validation data from shallow (i.e., <2 m) to
deep (15 m) water along a 15 km transect in the middle of the study
area. Two areas of erroneously shallow values appear to be caused by a
sediment plume from the adjacent channel (center of plot), and a signal-
to-noise weakness of the sensor to accurately detect deeper depths (right
side of plot) as noted by Kerr and Perkis (Kerr and Purkis, 2018). Future
work will include correcting for tides, which was not done here because
the maps produced were validated against DTMs that were not tidally
corrected.
refinement one is able to calculate used in the robust band ratio method This work was supported by the United States Department of Energy
(Stumpf et al., 2003). [proposal number 0000-Z350-20]; NASA, United States [grant numbers
Recent efforts to advance large-scale SDB mapping successfully NNX14AP62A and 80NSSC20K0017]; NSF, United States [grant number
developed IOP-estimation algorithms and demonstrated accurate deri 1762493]; and NOAA United States Integrated Ocean Observing System
vation of tuning coefficients, but relied on single scenes for a given area [grant number NA19NOS0120199].
(Kerr and Purkis, 2018; Zhu et al., 2020), or those manually selected for
pristine viewing conditions that were then mosaicked during pre CRediT authorship contribution statement
processing to ensure consistent radiometry (Li et al., 2019). Our
approach accounts for turbid water (assuming Chl-a-dominated Matthew J. McCarthy: Conceptualization, Methodology, Software,
turbidity), automatically identifies and corrects for any apparent sun Validation, Formal analysis, Writing – original draft. Daniel B. Otis:
glint, and applies robust radiometric calibration and atmospheric Conceptualization, Methodology, Validation. David Hughes: Concep
correction. These advances are significant in that they are more widely tualization, Resources, Supervision, Writing – review & editing, Project
applicable to a variety of scene conditions (i.e., glinted or glint-free, administration. Frank E. Muller-Karger: Conceptualization, Resources,
moderately turbid or clear, collected across multiple years and all sea Supervision, Writing – review & editing, Funding acquisition, Project
sons), and require no manual preprocessing. As a result, this algorithm administration.
completed mapping from ingestion of Level-1B imagery to bathymetry-
map output in less than one minute per image. Accuracy based on RMSE
was 1.95 m, compared with 0.89–2.62 m (Kerr and Purkis, 2018),
Fig. 5. Depth along a transect: WorldView map versus DEM validation map. The gap in values corresponds to land.
6
M.J. McCarthy et al. International Journal of Applied Earth Observation and Geoinformation 107 (2022) 102693
Declaration of Competing Interest Kutser, T., Hedley, J., Giardino, C., Roelfsema, C., Brando, V.E., 2020. Remote sensing of
shallow waters – a 50 year retrospective and future directions. Remote Sens.
Environ. 240, 111619 https://doi.org/10.1016/j.rse.2019.111619.
The authors declare that they have no known competing financial Li, J., Knapp, D.E., Schill, S.R., Roelfsema, C., Phinn, S., Silman, M., Mascaro, J.,
interests or personal relationships that could have appeared to influence Asner, G.P., 2019. Adaptive bathymetry estimation for shallow coastal waters using
the work reported in this paper. Planet Dove satellites. Remote Sens. Environ. 232, 111302. https://doi.org/
10.1016/j.rse.2019.111302.
Li, J., Knapp, D.E., Lyons, M., Roelfsema, C., Phinn, S., Schill, S.R., Asner, G.P., 2021.
Acknowledgements Automated global shallow water bathymetry mapping using google earth engine.
Remote Sensing 13, 1469. https://doi.org/10.3390/rs13081469.
Ma, Y., Zhang, H., Li, X., Wang, J., Cao, W., Li, D., Lou, X., Fan, K., 2021. An exponential
Notice: This manuscript was authored by UT-Battelle, LLC, under algorithm for bottom reflectance retrieval in clear optically shallow waters from
contract DE-AC05-00OR22725 with the US Department of Energy multispectral imagery without ground data. Remote Sensing 13, 1169. https://doi.
(DOE). The US government retains and the publisher, by accepting the org/10.3390/rs13061169.
Martin, J., Eugenio, F., Marcello, J., Medina, A., 2016. Automatic sun glint removal of
article for publication, acknowledges that the US government retains a multispectral high-resolution worldview-2 imagery for retrieving coastal shallow
non-exclusive, paid-up, irrevocable, worldwide license to publish or water parameters. Remote Sensing 8, 37. https://doi.org/10.3390/rs8010037.
reproduce the published form of this manuscript, or allow others to do Mayer, L., Jakobsson, M., Allen, G., Dorschel, B., Falconer, R., Ferrini, V., Lamarche, G.,
Snaith, H., Weatherall, P., 2018. The nippon foundation—GEBCO seabed 2030
so, for US government purposes. DOE will provide public access to these project: the quest to see the world’s oceans completely mapped by 2030. Geosciences
results of federally sponsored research in accordance with the DOE 8, 63. https://doi.org/10.3390/geosciences8020063.
Public Access Plan. Disclosures: The authors declare no conflicts of McCarthy, M.J., Radabaugh, K.R., Moyer, R.P., Muller-Karger, F.E., 2018. Enabling
efficient, large-scale high-spatial resolution wetland mapping using satellites.
interest.
Remote Sens. Environ. 208, 189–201.
McCarthy, M.J., Jessen, B., Barry, M.J., Figueroa, M., McIntosh, J., Murray, T.,
References Schmid, J., Muller-Karger, F.E., 2020. Automated high-resolution time series
mapping of mangrove forests damaged by hurricane Irma in Southwest Florida.
Caballero, I., Stumpf, R.P., 2020. Atmospheric correction for satellite-derived Remote Sensing 12, 1740. https://doi.org/10.3390/rs12111740.
bathymetry in the Caribbean waters: from a single image to multi-temporal NOAA Hurricane Irma, Florida Keys: Supplemental LiDAR & Shoreline Mapping
approaches using Sentinel-2A/B. Opt. Express 28 (8), 11742. https://doi.org/ (Technical Data Report No. FL-1806-TB-C), 2020. Quantum Spatial, Corvallis, OR.
10.1364/OE.390316. Overstreet, B.T., Legleiter, C.J., 2017. Removing sun glint from optical remote sensing
Dash, P., Walker, N., Mishra, D., D’Sa, E., Ladner, S., 2012. Atmospheric correction and images of shallow rivers: removing sun glint from river imagery. Earth Surf. Process.
vicarious calibration of oceansat-1 Ocean Color Monitor (OCM) data in coastal case 2 Landforms 42 (2), 318–333. https://doi.org/10.1002/esp.4063.
waters. Remote Sensing 4, 1716–1740. https://doi.org/10.3390/rs4061716. Sandidge, J.C., Holyer, R.J., 1998. Coastal bathymetry from hyperspectral observations
Hedley, J.D., Harborne, A.R., Mumby, P.J., 2005. Technical note: simple and robust of water radiance. Remote Sens. Environ. 65 (3), 341–352. https://doi.org/10.1016/
removal of sun glint for mapping shallow-water benthos. Int. J. Remote Sens. 26 S0034-4257(98)00043-1.
(10), 2107–2112. https://doi.org/10.1080/01431160500034086. Shelestov, A., Lavreniuk, M., Kussul, N., Novikov, A., Skakun, S., 2017. Exploring google
Hochberg, E.J., Andrefouet, S., Tyler, M.R., 2003. Sea surface correction of high spatial earth engine platform for big data processing: classification of multi-temporal
resolution ikonos images to improve bottom mapping in near-shore environments. satellite imagery for crop mapping. Front. Earth Sci. 5 https://doi.org/10.3389/
IEEE Trans. Geosci. Remote Sensing 41 (7), 1724–1729. https://doi.org/10.1109/ feart.2017.00017.
TGRS.2003.815408. Stocker, T.F., Qin, D., Plattner, G.-K., Tignor, M., Allen, S.K., Boschung, J., Nauels, A.,
Hu, C., Lee, Z., Franz, B., 2012. Chlorophyll a algorithms for oligotrophic oceans: a novel Xia, Y., Bex, V., Midgley, P.M., 2013. Climate Change 2013: The Physical Science
approach based on three-band reflectance difference: a novel ocean chlorophyll A Basis. Cambridge University Press, Cambridge, UK.
algorithm. J. Geophys. Res. 117 (C1) https://doi.org/10.1029/2011JC007395. Stumpf, R.P., Holderied, K., Sinclair, M., 2003. Determination of water depth with high-
Hughes, D., Holyer, R., Lee, Z., 2001. Remote sensing algorithms by numerical inversion resolution satellite imagery over variable bottom types. Limnol. Oceanogr. 48
of radiative transfer models: neural network and optimization methods compared. (1part2), 547–556. https://doi.org/10.4319/lo.2003.48.1_part_2.0547.
In: Presented at the International Conference on Current Problems in Optics of Werdell, P.J., Bailey, S.W., 2005. An improved in-situ bio-optical data set for ocean color
Natural Waters, D.S. Rozhdestvensky Optical Society, St. Petersburg, Russia. algorithm development and satellite data product validation. Remote Sens. Environ.
Jackson, C.R., Alpers, W., 2010. The role of the critical angle in brightness reversals on 98 (1), 122–140. https://doi.org/10.1016/j.rse.2005.07.001.
sunglint images of the sea surface. J. Geophys. Res. 115 (C9) https://doi.org/ Zhou, G., Xu, W., Niu, C., Zhang, K., Ma, Z., Wang, J., Zhang, Y., 2017. Versatile time-
10.1029/2009JC006037. dependent spatial distribution model of sun glint for satellite-based ocean imaging.
Kay, S., Hedley, J., Lavender, S., 2009. Sun glint correction of high and low spatial J. Appl. Remote Sens 11 (1), 016020. https://doi.org/10.1117/1.JRS.11.016020.
resolution images of aquatic scenes: a review of methods for visible and near- Zhu, J., Hu, P., Zhao, L., Gao, L., Qi, J., Zhang, Y., Wang, R., 2020. Determine the stumpf
infrared wavelengths. Remote Sensing 1, 697–730. https://doi.org/10.3390/ 2003 model parameters for multispectral remote sensing shallow water bathymetry.
rs1040697. J. Coastal Res. 102 https://doi.org/10.2112/SI102-007.1.
Kerr, J.M., Purkis, S., 2018. An algorithm for optically-deriving water depth from
multispectral imagery in coral reef landscapes in the absence of ground-truth data.
Remote Sens. Environ. 210, 307–324. https://doi.org/10.1016/j.rse.2018.03.024.